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 Continue reading "MATLAB –Matlab pdist2 m

PostCSS Loader. You will want the second output of min (combined with ind2sub) to determine the row/column of the pdist2 matrix that corresponds to the minimum distance. x = [x (1:end-1),x (2:end)]; as mentioned in the research paper I am following. Z (2,3) ans = 0. pdist2 has no problem with the two inputs having different numbers of rows (try for example pdist2 (randn (5,2), randn (7,2)) ). Mahalanobis distance has no meaning between two multiple-element vectors. Z (2,3) ans = 0. Hi, please I want to calculate the distance. Find the treasures in MATLAB Central and discover how the community can help you! Start Hunting!This MATLAB function performs k-means clustering to partition the observations of the n-by-p data matrix X into k clusters, and returns an n-by-1 vector (idx) containing cluster indices of each observation. Tags matlab; array; Products MATLAB; Community Treasure Hunt. In human motion analysis, a commond need is the computation of the distance between defferent point sets. Overview of OpenCascade Library [email protected] 摘要Abstract:对OpenCascade 库的功能及其实现做简要介绍。. One matrix has 2 sets of coordinates Copy. The builtin function `pdist2` could be helpful, but it is inefficient for multiple timeframes data. workspace; % Make sure the workspace panel is showing. Connect and share knowledge within a single location that is structured and easy to search. Hi, So if I have one 102x2 matrix of x,y coordinates, and another 102x2 matrix of x,y coordinates, can pdist be used to compare all the rows in matrix 1 with the rows in matrix 2?. 2. D = pdist2 (F (i). If you want the cosine, use 1-pdist2 (matrix1,matrix2,'cosine'). Copy. Rows of X and Y correspond to observations ,2 Answers. it could be little slower than pdist2. apply (outer (a,t (b),"-"),c (1,4),function (x)sqrt (sum (diag (x*x)))) is the m x n matrix of distances between the m rows of a and n rows of b . linux 网络的配. pdist2 equivalent in MATLAB version 7. matlab use my own distance function for pdist. % Learning toolbox. example. I am computing a similarity matrix based on Euclidean distance in MATLAB. Find Nearest Points Using Custom Distance Function. I want a supervised learning on a distance metric. 5 single thread - foo3() (see below) - 18. The Chebyshev distance between two n-vectors u and v is the maximum norm-1 distance between their respective elements. 1. Define the center and diameter of a. One possible way to define a kernel. I used this MATLAB function to compute the distance matrix Dists = pdist2(fruchterman_graph(:,:),fruchterman_graph(:,:),'euclidean'); but it fails on large networks for both speed and finally memory. Add the %#codegen compiler directive (or pragma) to the entry. squareform returns a symmetric matrix where Z (i,j) corresponds to the pairwise distance between observations i and j. between each pair of observations in the MX-by-N data matrix X and. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. ), however at the end, it shows an important message. It computes the distances between rows of X. To save memory on the device, you can separate training and prediction by using kmeans and pdist2, respectively. Mahalanobis distance has no meaning between two multiple-element vectors. ^2))) Now I want to change euclidean into chi-square distance, does anyone know how to calculate chi-square distance between two vectors? 2 Comments. You have taken the transpose of 'condition1oder2' which gives it 36 columns. 2. Learn more about sorting points, matrix manipulation, comparing distances, pdist2, indexing . 5 seconds julia 0. A el 7 de Feb. But, the function is easy to write and can be passed in as a handle to pdist2. I want to use pdist2 to return the indexes of the second smallest values instead of the values themselves. distances = pdist2 (xySet1, xySet2);Dear MATLAB-Community, I would like to calculate the distances between each entry in M (1 113 486 x 2) and N (1 960 000 x 2) and store the indices for the distances that are within a tolerance val. out = 1×10. pdist (X): Euclidean distance between pairs of observations in X. Hi, So if I have one 102x2 matrix of x,y coordinates, and another 102x2 matrix of x,y coordinates, can pdist be used to compare all the rows in matrix 1 with the rows in matrix 2?. . 1. mean: Compute the mean. mahal() function. Goncalves. Copy. . I was told that by removing unnecessary for loops I can reduce the execution time. Dec 17, 2014 at 14:41. It will not be the longest perpendicular distance along the centerline. Sign in to comment. vector. Hi, i have two matrices A, of size mx2, and B, of size nx2. spatial. median: Compute the median. Fowzi barznji on 16 Mar 2020. Where N is the number of data and D is the number of columns. . This is a very minor calculation for pdist2. 9448. But in the example, I need to put the whole matrix something like this. Compute the Euclidean distance between pairs of observations, and convert the distance vector to a matrix using squareform. Theme. out. Given the matrix mx2 and the matrix nx2, each row of matrices represents a 2d point. Theme. D = pdist2 (X,Y,@CalcDist) function D2=CalcDist (ZI,ZJ) % calculation of distance. This gave me a m x m matrix of distances. However, generally the manual calculation is slightly faster or. C/C++ Code Generation Generate C and C++ code using MATLAB® Coder™. Q&A for work. pdist2 computes the distances between observations in two matrices and also returns a. Both represent a number of positions in 3D-space. Learn more about histogram comparison, image comparison, image segmentation, distance comparison, chi-square Image Processing Toolbox hi, I am having two Images I wanted compare these two Images by histograms I have read about pdist that provides 'chisq' but i think the way i am doing is not correct. I agree with Tal Darom, pdist2 is exactly the function you need. In human motion analysis, a commond need is the computation of the distance between defferent point sets. To save memory on the device, you can separate training and prediction by using kmeans and pdist2, respectively. To save memory on the device, you can separate training and prediction by using kmeans and pdist2, respectively. Sign in to answer this question. I cannot found any tips on how to convert this statement: matlab. between each pair of observations in the MX-by-N data matrix X and. You can try the following workarounds: 1. pdist2 has no problem with the two inputs having different numbers of rows (try for example pdist2 (randn (5,2), randn (7,2)) ). 0. CodeConfig (MATLAB Coder) を参照してください。 pdist2 は、生成されたスタンドアロン C/C++ コードにおいて、整数型 (int32) のインデックスを返します。そのため、関数は、単精度の入力を使用する場合、厳密な単精度のサポートを可能にしま. The function pdist2 with Hamming distance already does this for you: pdist2(A,B,'hamming') This gives the result as percentage of coordinates that differ. Ideally it is a distance between a vector (or distances between a set of vectors) and some given distribution defined by means and covariances. I followed the documentation of MATLAB where in order to calculate Mahalanobis Distance, I have to use pdist2: "D = pdist2 (X,Y,'mahalanobis',C)" A1= [75 87 90]; A2= [99 88 100]; C = nancov (A1,A2); D. You can use pdist2 to compute all distances and then pick the minimal distance. It uses the same variable names from my answer. and pdist2() where I plotted all 3 of the closest pairs. function Distance = euclidean (x,y) % This function replaces the function pdist2 available only at the Machine. . ,an},将它们按大小顺序排列,取中间的那个值作为滤波器的输出。 You can use the pdist2 MATLAB / Octave function to calculate pairwise distances between two sets of observations. Let X be an MxP matrix representing m points in P-dimensional space and Y be an NxP matrix representing another set of points in the same space. – am304. x = 177136 x 1 y = 177136 x 1 I have the following query points to which I. Maybe the differences are due to the incorrect use of the indexes i and j. If observation i in X or observation j in Y contains NaN values, the function pdist2 returns NaN for the pairwise distance between i and. pdist2 Pairwise distance between two sets of observations. 尝试类似的方法,比如. In Matlab: dist = sqrt(sum((a-b). m","path":"MyData. When I put a comment % on the second plot circle command viscircles([x(i),y(j)],. squareform 을 사용하여 관측값 i 와 관측값 j 간의 거리를 쉽게 확인할 수 있습니다. @ServerS Note also that pdist2 can be used with other distances, not just Euclidean – Luis Mendo. Teams. Data can be combined with base map. You can use the pdist2 MATLAB / Octave function to calculate pairwise distances between two sets of observations. which -all pdist will list all the pdist MATLAB files in your MATLAB path. – Nicky Mattsson. the results that you should get by using the pdist2 are as follows : 92. For example instead of @dist(ZI,ZJ) I should send something like @dist(ZI,ZJ,PD) which PD is a parameter (a matrix). It finds the distance for each pair of coordinates specified in two vectors and NOT the distance between two matrices. The dot of the i will have a lower y value of its centroid than the body of the i. and pdist2() where I plotted all 3 of the closest pairs. Hello all, I am very new to Matlab and I am having quite a bit of difficulty understanding how to calculate the distance between pairs of points in a 2-D space. on 16 Feb 2023. Along the diagonal are the matching row cases. MY-by-N data matrix Y. y = squareform (Z)comparison of two histograms using pdist2. I want the haversine distance to be more specific. Neighbors are defined as points whose Voronoi polygons share one or more (finite) vertices. Could I modify in some manner pdist2 command?I would like to use the command pdist2 in order to compute distance between two geographical coordinates. matlab pdist2,matlab中pdist2函数; windows 10 bash change PS1; linxu中删除指定时间之前的文件shell脚本; react中如何做成 tab 切换的效果; __declspec的英文含义; 从零复现PyTorch版(3) webpack报错:Invalid options object. I believe you should use pdist rather than pdist2. between each pair of observations in the MX-by-N data matrix X and. It computes the distances between rows of X. For information on products not available, contact your department license administrator about access options. Z = squareform (D) Z = 3×3 0 0. In human motion analysis, a commond need is the computation of the distance between defferent point sets. y = squareform (Z)This MATLAB function returns the distance between each pair of observations in X and Y using the metric specified by Distance. . So I have a matrix that is 330,000 observations = rows x 160 variables = columns. May 1st, 2018 - The whole kicker is you can simply use the built in MATLAB function pdist2 p1 p2 ‘euclidean MATLAB – Calculate L2 Euclidean distance Programming Tags Data Mining in MATLAB Mahalanobis Distance April 30th, 2018 - Euclidean Distance The Euclidean This is awesome especially the matlab code for the mahalanobis distance. sir is there any function to reduce row size. d = ( y − μ) ∑ − 1 ( y − μ). ',testpg. For assessing the similarity between the histograms, 'cosine' is probably a more meaningful option than 'jaccard' . 5 multi threads - foo4() (see below) - 4. In Matlab there exists the pdist2 command. plot (xi,t1,'r',xi,t2,'b'); legend ( {'Manual','Pdist2'}) Which probably suggests that any differences in time between pdist2 and manual calculation are negligible and more dependent on the current background state of the CPU. You need to rename or delete c: oolboxclassifypdist2. This function can do both - it will function like pdist if only one set of observations is provided and will function like pdist2 if two. Developed by MathWorks, MATLAB allows matrix manipulations, plotting of functions and. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. Learn more about optimization MATLAB. From help pdist2: 'cosine' - One minus the cosine of the included angle between observations (treated as vectors) Since the cosine varies between -1 and 1, the result of pdist2 (. 0. For the future, try typing edit pdist2 (or whatever other function) in Matlab, in most cases, you will see the Matlab function, which you can then convert to python. tic d = sqrt (sum ( (p1-pn). pairwise distance between rows of matrix A and B. When the discriminant analysis typically involves calculation of the distance between two samples, a variety of multivariate statistics theory distance formula. 13. 1. % n = norm (v) returns the Euclidean norm of vector v. In this workflow, you must pass training data, which can be of considerable size. distance used is L1 norm. The code seems to run fine, but when calling predict I get the following warning: Theme. {"payload":{"allShortcutsEnabled":false,"fileTree":{"classify":{"items":[{"name":"private","path":"classify/private","contentType":"directory"},{"name":"Contents. md","path":"README. For code generation, define an. For latitude and longitude, usually the haversine method is used. computes the distance between objects in the data matrix, , using the method. I'd like to compute the average distance between each observation in my matrix, but pdist() fails here, because apparently it would take. I have two matrices with x values in column 1 and y values in column 2. squareform returns a symmetric matrix where Z (i,j) corresponds to the pairwise distance between observations i and j. 8717. mahal. % ZJ is an m2-by-n matrix containing multiple observations. computes the Euclidean distance between pairs of objects in . Learn more about TeamsAnswers (2) You can do this with the pdist2 function. For example, you can find the distance between observations 2 and 3. pdist2 is providing all the pairwise distances. I want to compute the distance between two vectors by using Jaccard distance measure in matlab program. In this workflow, you must pass training data, which can be of considerable size. m or remove that directory from your MATLAB path. Generate Code. Then execute 'memory' command in the Command Window and send the output. octave pdist (pairwise distance) 3. Each row of both matrices identifies a point in 2D space. My one-line implementation of both MATLAB's pdist and pdist2 functions which compute the univariate (pdist) or bivariate (pdist2) Euclidean distances between all pairs of input observations. John D'Errico on 26 May 2019. Use kmeans to create clusters in MATLAB® and use pdist2 in the generated code to assign new data to existing clusters. X is a 50*3 matrix, Y is a 60*3 matrix. pdist2 Pairwise distance between two sets of observations. Define an entry-point function named findNearestCentroid that accepts centroid positions and new data, and then find the nearest cluster by using pdist2. Pass Z to the squareform function to reproduce the output of the pdist function. % ZI is a 1-by-n vector containing a single observation. You could save half the time by computing each pair only once. >> jaccard_similarity = 1 - pdist2(bin_counts_a,bin_counts_b,'jaccard') jaccard_similarity = 0 gives 0 because each entry in bin_counts_b is (slightly) different from that in bin_counts_a . ) clear; % Erase all existing variables. pdist (X): Euclidean distance between pairs of observations in X. %. For a 2D input case, you can define a kernel function that takes two inputs and returns a scalar value. =1-pdist2(allPairs{jj,1},allPairs{jj,2}, 'cosine'); %performs cosine similarity and puts it in a cell array. My problem is taking those distances out of the matrix and finding the smallest combined distance for each unique set of X to Y measurements. See Also. This MATLAB function returns the distance between each pair of observations in X and Y using the metric specified by Distance. If observation i or j contains NaN values, the function pdist returns NaN for the pairwise distance between i and j. Fowzi barznji on 16 Mar 2020. m. I never need the non-squared distances. Generate C code that assigns new data to the existing clusters. This MATLAB function returns the distance between each pair of observations in X and Y using the metric specified by Distance. . I suppose x and y are matrixes, so you are using pdist2 to compute the distance between the observation i (from x(i)) and j (from y(j)). ^2)); % D is the similarity matrix end end. . I calculated out the distance from every point in X to every point in Y using the pdist2 tool. Mahalanobis distance in matlab: pdist2() vs. I need to build a for loop to calculate. mahal() function. pdist_oneLine. . Let us create a matlab script called speedtest. Generate C code that assigns new data to the existing clusters. D can also be a more general dissimilarity vector or matrix that conforms to the output format of pdist or pdist2, respectively. ,CodeAntenna代码工具网matlab pdist2,matlab中pdist2函数; windows 10 bash change PS1; linxu中删除指定时间之前的文件shell脚本; react中如何做成 tab 切换的效果; __declspec的英文含义; 从零复现PyTorch版(3) webpack报错:Invalid options object. I would like to use the command pdist2 in order to compute distance between two geographical coordinates. Idx = knnsearch (X,Y) finds the nearest neighbor in X for each query point in Y and returns the indices of the nearest neighbors in Idx, a column vector. Copy. 由于Debug和Release模式下,编译器的行为不同,导致有些bug在Debug模式下并不能检查出来,而Release模式下又无法单步调试。因此. tic; d2 = pdist2 (p1,pn); t2 (p) = toc; end. example. if you don't have a working pdist2, use the following code. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. 0 matlab Pdist2 with mahalanobis metric. PostCSS Loader. % ZJ is an m2-by-n matrix containing multiple observations. Matlab pdist2 : Out of memory Ask Question Asked 6 years, 7 months ago Modified 6 years, 7 months ago Viewed 267 times 1 I have a vector X which contain x. if you don't have a working pdist2, use the following code. MY-by-N data matrix Y. 普通に[MATLAB マハラノビス距離]でググるとmahalという関数がヒットしますが、この関数では、事前計算した共分散行列を受け付けてくれません。. Copy. Copy. Answers (1) This issue could be due to RAM limitations. Continue reading "MATLAB –. However, pdist2 is an optimized method to calculate the euclidean distances between points in two vectors. [D,I] =. m that is being called instead of MATLAB's pdist2. Hello all, I am very new to Matlab and I am having quite a bit of difficulty understanding how to calculate the distance between pairs of points in a 2-D space. I simply call the command pdist2(M,N). 9448. Generate C code that assigns new data to the existing clusters. 2070 83. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. mahal returns the squared Mahalanobis distance. Kernel (n)=exp (-0. Let X be an MxP matrix representing m points in P. The function you pass to pdist must take . To save memory on the device, you can separate training and prediction by using kmeans and pdist2, respectively. % Autor: Ana C. distances = pdist2 (CCstats (1). 0 matlab use my own distance function for pdist. 关键字Key Words:OpenCascade 、 occ 、 Modeling Kernel 、 CAD. It can be calculated as follows: D = A*B' + (1-A)* (1-B)'; The final distance measure can be done by testing for each pair. This can be modified as necessary, if one wants to apply distances other than the euclidean. for one run, the function was called upon 27,245 times. For assessing the similarity between the histograms, 'cosine' is probably a more meaningful option than 'jaccard' . Usage notes and limitations: If you supply the argument that represents the order of the diagonal matrix, then it must be a real and scalar integer value. But for a small number of huge arrays loops and isequal is faster. function Distance = euclidean (x,y) % This function replaces the function pdist2 available only at the Machine. Use kmeans to create clusters in MATLAB® and use pdist2 in the generated code to assign new data to existing clusters. There are two main classes: pdist1 which calculates the pairwise distances between observations in one matrix and returns a distance matrix. 使用Matlab计算各种距离. Hi, i have two matrices A, of size mx2, and B, of size nx2. This is a very minor calculation for pdist2. AnyLogic. Given the matrix mx2 and the matrix nx2, each row of matrices represents a 2d point. % Learning toolbox. A custom distance function for pdist2 needs two input arguments and the first must specify just a single observation: axa = pdist2(latlon1(1, 1:2), latlon2(:, 1:2), @haversine); % repeat for other values in latlon1d = pdist2 (first_xyz, second_xyz); [mindist, idx] = min (d, [], 2); Here first_xyz and second_xyz should be something-by-3 arrays of x, y, z coordinates. Matlab euclidean pairwise square distance function. Minkowski's distance equation can be found here. Y is also a 2D array where each row is a query point and you need to have the same number of columns as X. If a is m x r and b is n x r then. pdist2 (P1,P2, 'cityblock'); But in my case, I want to use the columns of my. This function can do both - it will function like pdist if only one set of observations is provided and will function like pdist2 if two sets of. optimize. 2种计算方式,一种直接利用pdist计算,另一种. Now I want to create a mxn matrix such that (i,j) element represents the distance from ith point of mx2 matrix to jth point of nx2 matrix. Learn more about distance, matched points, error, pdist2, distance between points Hello, I have two sets of matched points (matchedPoints1 and matchedPoints2, the size is 142x1 and the type is SURFPoints) and I want to. matlab中自带的计算距离矩阵的函数有两个pdist和pdist2。 前者计算一个向量自身的距离矩阵,后者计算两个向量之间的距离矩阵。 基本调用形式如下: D=pdist(X) D=pdist2(X,Y) 这两个函数都提供多种距离度量形式,非常方便,还可以调用自己编写的距离. 8899 259. Alternatively, you could avoid computing the 2D histogram by creating a grid covering your scattered points and computing the minimum distance from each grid point to one of your scattered points using pdist2 from the Statistics Toolbox. However, I use this matrix in a loop like this : for i:1:n find (Distance (i,:) <= epsilon);. I am not sure if the dice function can be used to compare two histograms, but you can use the function pdist2 to get a similarlity score between the histograms. % pairwise mahalanobis distance with pdist2() E = pdist2(X,Y,'mahalanobis',S); % outputs an 50*60 matrix with each ij-th element the pairwise distance between element X(i,:) and Y(j,:) based on the covariance matrix of X: nancov(X) %{ so this is harder to interpret than mahal(), as elements of Y are not just compared to. ) Y = pdist (X,'. For MATLAB's knnsearch, X is a 2D array that consists of your dataset where each row is an observation and each column is a variable. m is interfering with use of the pdist2 from the Statistics toolbox. 6. 1 Answer. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. I studied about pdist2 function , I used it : Theme. How to separately compute the Euclidean Distance in different dimension? 2. With this, the proposed method and pdist2 appear to be very close (and perhaps pdist2 is faster in some regimes). Sorted by: 4. In Matlab there exists the pdist2 command. but works fine. 7309 142. Find the treasures in MATLAB Central and discover how the community can help you! Start Hunting!I want to use the Manhattan Distance and I have a definition for it, so how the heuristic for it should be calculated, but I am not sure if it is correct. Second, Pdist2 Pairwise distance between, sets of observations Syntax D = Pdist2 (x, y) D. Notes. @all, thanks a lot. 5. 2. D = PDIST2 (X,Y,DISTANCE, 'Largest',K) returns the K largest pairwise distances sorted in descending order. I use the pdist2 function to calculate the the distance between the points stored in matr. D = pdist2(x, y) < 10; D(1:size(D,1)+1:end) = 0; G = graph(D); C = conncomp(G); The connected components is vector that shows the cluster numbers. PostCSS Loader. D = pdist2 (X,Y,@CalcDist) function D2=CalcDist (ZI,ZJ) % calculation of distance. 2. . The main idea is to eliminate image pixes that are far away from the circumference before computing pdist2. There are two main classes: pdist1 which calculates the pairwise distances between observations in one matrix and returns a distance matrix. m. For code generation, define an. nico1234. My question is why applying the mean-function over the output of pdist2() in c. . Copy. 欧氏距离(Euclidean Distance) 欧氏距离是最易于理解的一种距离计算方法,源自欧氏空间中两点间的距离公式。(1)二维平面上两点a(x1,y1)与b(x2,y2)间的欧. This MATLAB function returns the distance between each pair of observations in X and Y using the metric specified by Distance. I have two matrices X and Y. We would like to show you a description here but the site won’t allow us. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. matlab R2012a - 8. PostCSS Loader. Given a matrix A of size [N,3] and a matrix B of size [M,3], you can use the pdist2 function to get a matrix of size [M,N] containing all the pairwise distances. Idx has the same number of rows as Y. . This way, you offload the bother of vectorization to the people who wrote MATLAB/Octave (and they have done a pretty good job of it) X = rand (10,3); Y = rand (5,3); D = pdist2 (X, Y); D is now a 10x5 matrix where the i, j th. distfun must. Define an entry-point function named findNearestCentroid that accepts centroid positions and new data, and then find the nearest cluster by using pdist2. Fully MATLAB compatible. I know the distance(lat1,lon1,lat2,lon2) command is the suitable for this but I want to use pdist2 command. Compute the Euclidean distance. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. A and B should have same no of columns. . I need to build a for loop to calculate the pdist2 between the first row of A and all the rows of B, the second row of A and all. 5 seconds julia 0. Figure out how that file got there or remove that folder from your path so MATLAB can use the correct one. % n = norm (v) returns the Euclidean norm of vector v. de 2012 1 Enlazar Traducir Comentada: Ana Gonçalves el 16 de Feb. t D (i,j) is contains the number of matches between the sample i in A and the sample j in B. Learn more about pdist2, error, stats MATLAB Every time I want to use pdist2, I get the following error: Undefined function 'pdist2mex' for input arguments of type 'double'. This is accounted for when auto-calculating sigma # above by dividing by sqrt(2) # Here is how you first. This function computes the M-by-N distance matrix D where D(i,j) is the distance between. matlab R2012a - 8. % n = norm (v) returns the Euclidean norm of vector v. MATLAB 距离函数及用法. A custom distance function for pdist2 needs two input arguments and the first must specify just a single observation: axa = pdist2(latlon1(1, 1:2), latlon2(:, 1:2), @haversine); % repeat for other values in latlon1Documentation, examples, videos, and other support resources for MathWorks products including MATLAB and Simulink. g. 判别分析时,通常涉及到计算两个样本之间的距离,多元统计学理论中有多种距离计算公式。MATLAB中已有对应函数,可方便直接调用计算。距离函数有:pdist, pdist2, mahal, squareform, mdscale, cmdscale. Thus if you input a matrix with N points and one with M points, you get N*M distances. Add a comment. matlab use my own distance function for pdist. normal,'jaccard'); end. Modified 8 years, 5 months ago. Nov 8, 2013 at 9:26. This might cause MATLAB to become unresponsive. This MATLAB function returns the distance between each pair of observations in X and Y using the metric specified by Distance. I have two matrices X and Y. function D = pdist2( X, Y, metric ) ↑ Error:. 9448. Learn more about matlab, pdist2, pdist, distance, jaccard, measure, vectors, error, function, unequal I want to compute the distance between two vectors by using Jaccard distance measure in matlab program. tic; d2 = pdist2 (p1,pn); t2 (p) = toc; end.